To save time and ensure FuseDocs (and other programs) can correctly read PDFs produced by MYOB, please follow these steps:
1) Open the Income Tax Return in MYOB
2) Select Reports > Print Return
3) Select the job options you prefer on the Print Form, and click OK
4) Select Preview down the bottom
5) This will open a preview of the final PDF. Click "Share It" at the top of the window
6) File the document into your Document Management System as usual
FuseDocs will now be able to correctly pull the document from the Document Management System when running a compilation.